osmose.analysis

Ensemble statistics and ecological indicators for OSMOSE outputs.

Functions

biomass_long(results)	Normalize a run's biomass output to long form: columns time, species, value.
ensemble_stats(replicate_dfs, value_col[, ...])	Compute mean, std, 95% CI across replicate DataFrames.
format_delta_report(deltas, *[, metric, ...])	Markdown table of per-species deltas, ranked (as returned by run_delta).
mean_tl_catch(yield_df, tl_df)	Compute weighted mean trophic level of catch per timestep.
run_delta(baseline, variant, *[, metric, ...])	Per-species delta of metric (windowed mean) between two runs, ranked by |% change|.
shannon_diversity(biomass_df)	Compute Shannon-Wiener diversity index per timestep.
size_spectrum_slope(spectrum_df)	Compute log-log regression slope of size spectrum.
summary_table(replicate_dfs, value_col)	Per-species summary statistics across replicates.

Classes

SpeciesDelta(species, baseline_mean, ...)