osmose.calibration.objectives

Objective functions for OSMOSE calibration.

Functions

abundance_rmse(simulated, observed[, species])	RMSE for abundance time series.
biomass_rmse(simulated, observed[, species])	Root mean square error of biomass time series.
catch_at_size_distance(simulated, observed)	RMSE between 2D catch-at-size outputs.
diet_distance(simulated, observed)	Frobenius norm distance between diet composition matrices.
normalized_rmse(simulated, observed)	RMSE normalized by the mean of observed values.
size_at_age_rmse(simulated, observed)	RMSE between 2D size-at-age outputs.
weighted_multi_objective(objectives, weights)	Weighted dot product of objective values.
yield_rmse(simulated, observed[, species])	RMSE for yield time series.

Classes

BiomassRMSEObjective(observed[, species])	Picklable biomass-RMSE objective (wraps biomass_rmse; reshapes wide->long).
DietDistanceObjective(observed)	Picklable diet-distance objective (wraps diet_distance; holds the observed matrix).